MASS SPECTROSCOPY FOR DISCOVERY & GROWTH
Proteomics & Bioanalysis
Located on the Buffalo Niagara Medical Campus, UB's Proteomics and Bioanalysis Core specializes in proteomics, PK/PD, lipidomics, metabolomics and biopharmaceutical analysis. The Core is a regional resource for UB researchers and regional investigators, providing state-of-the art instrumentation and expertise in proteomics and bioanalysis. Partners trust our services from concept to completion. We assist Fortune 500 companies and startups with REID programs tailored to fit their needs.
Specializing in proteomics, liquid chromatography, mass spectrometry and bioinformatics
Whether your project is large or small, we can help with the identification and quantification of proteins and proteoforms present in a biological sample. Our support can enable insights into the complexities and emergent properties of biological systems for drug discovery and development activities. After an initial discussion of your requirements, we will confirm how we can help. If you'd like to proceed, we'll assign an expert team and project manager.
The facility has several main research foci:
• Ultra-sensitive quantification of small-molecule analyses, such as drugs, metabolites and biomolecules
• Comprehensive protein expression profiling and differential proteome analysis
• Ultra-sensitive quantification of proteins/peptides
SERVICES
Protein identification
- Digestion with trypsin or alternative enzymes
- Sample preparation with RPLC and retention time determination in chromatogram
- Peptide fragmentation (HCD) and m/z determination in MS/MS spectrum
- Peptide/protein identification with database searching software
Protein characterization
- Post-translational modifications (PTMs): phosphorylation, deamidation, methylation, nitration, acylation
- Other: cleavage site determination, amino acid substitution, disulfide crosslinking, chemical modifications
Quantitative proteomics
- Label-free quantitative LC-MS/MS
- Quantification of whole proteome in samples
- > 100 sampling capacity
- Efficient and reproducible on-pellet digestion
- Separation on long nano LC column
- High-resolution MS on Orbitrap Fusion Lumos
- Accurate quantification models
Data analysis packages
- Protein/peptide a PTM identification: Proteome Discoverer (SEQUEST/MASCOT), MSGF+, PEAKS, Maxquant
- Peptide filtering a protein grouping: IDPicker, Scaffold
- Proteome-wide quantitative analysis: SIEVE, Skyline, DIANN, MaxQuant
Technologies
Micro-scaffold Assisted Spatial Proteomics (MASP) -
Ion-current-based MS1 global proteomic quantification Ion (IonStar) - an MS1-based quantitative method devised for large-cohort proteomics analysis, which prominently alleviates issues associated with quantitative precision, missing data, and false-positive discovery of protein changes.
State-of-the art instrumentation
The Core consists of two instrument rooms, totaling 600 sq ft, which house a number of state-of-the-art liquid chromatography (LC) systems, mass spectrometer (MS), and sample processing instruments:
- Thermo Orbitrap Astral mass spectrometer
- Thermo TSQ Altis triple quadrupole mass spectrometer
- Thermo TSQ Quantiva triple quadrupole mass spectrometer
- Thermo Dionex Ultimate 3000 nano/micro HPLC systems with WPS-3000 autosamplers
- Waters Bioseparation semi-preparation HPLC system
- Several additional nano/micro LC systems (i.e. Eksigent nano-2D, Agient 1200-series micro HPLC, Shimadzu AC20 HPLC)
Put us to work for you
Our team is dedicated to providing comprehensive and cost-effective services to UB's scientific community, partner institutions, and industry collaborators. We welcome collaborations on both research projects and commercial endeavors. Contact us to request a consultation.
COMPANIES WE WORK WITH
PUBLICATIONS
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Additional life sciences resources available to our partners
Take your research to the next level with state-of-the art instrumentation and expertise in our Genomics and Bioinformatics Core.
Our integrated, enterprise-level biorepository program offers biospecimen processing and storage services to support healthcare research and development.
Advance your discoveries and give them room to grow with fully equipped laboratories and specialized amenities in our life sciences incubator spaces.
Access infrastructure and experts in software development, artificial intelligence and data analytics at our Center for Computational Research.