Software Engineering

CCR's software engineering group supports a wide variety of scientific disciplines on a number of development platforms (including Linux, PC, Web-based software) and maintains expertise in a number of programming languages including C, C++, Java, PHP, Perl, Python, and Fortran, among others. Expertise includes all aspects of software engineering including software stakeholder identification, generation of software requirements, design and implementation of code, testing, and iterative design. In addition, CCR supports machine architecture design, algorithm development and optimization, database engineering, GUI interface design, security, web portal design.

Examples Include:

  • REDfly, a collection of known Drosophila transcriptional cis-regulatory modules
  • Genotator, A dynamic and customizable microbial genome annotation system for publishing and editing bacterial and viral genomes.
  • The AAHSL library statistics portal, developed for the Association of Academic Health Sciences Library to support the collection, analysis, and presentation of annual statistical information for libraries in the United States and Canada.
  • OpenXDMoD is a NSF supported open source tool used by HPC centers worldwide to optimize the performance of HPC infrastructure, including user application codes.

For more information, please email ccr-help @ or fill out the Contact Us form