Reaching the potential of electron diffraction. Acehan, D, Spoth, KA, Budziszewski, GR, Snell, ME, Campomizzi, CS, Lynch, ML, Bowman, SEJ. Cell Reports Physical Science. 2024 Jun 19. doi: 10.1016/j.xcrp.2024.102007.
Applying 3D ED/MicroED workflows toward the next frontiers. Aragon M, Bowman SEJ, Chen CH, Cruz MJ, Decato DA, Eng ET, Flatt KM, Gulati S, Li Y, Lomba CJ, Mercado B, Miller J, Palatinus L, Rice WJ, Waterman D, Zimanyi CM. Acta Crystallogr C Struct Chem. 2024 Jun 1. doi: 10.1107/S2053229624004078.
Structural transitions modulate the chaperone activities of Grp94. Amankwah YS, Fleifil Y, Unruh E, Collins P, Wang Y, Vitou K, Bates A, Obaseki I, Sugoor M, Alao JP, McCarrick RM, Gewirth DT, Sahu ID, Li Z, Lorigan GA, Kravats AN. Proc Natl Acad Sci U S A. 2024 Mar 19;121(12):e2309326121.
Computational identification of a systemic antibiotic for gram-negative bacteria. Miller RD, Iinishi A, Modaresi SM, Yoo BK, Curtis TD, Lariviere PJ, Liang L, Son S, Nicolau S, Bargabos R, Morrissette M, Gates MF, Pitt N, Jakob RP, Rath P, Maier T, Malyutin AG, Kaiser JT, Niles S, Karavas B, Ghiglieri M, Bowman SEJ, Rees DC, Hiller S, Lewis K. Nat Microbiol. 2022 Oct;7(10):1661-1672.
Biological networks across scales. Bogdan, P, Caetano-Anolles, Jolles, A, Kim, H, Morris, J, Murphy, C, Royer, Snell EH, Steinbrenner, A. and Strausfeld, N. (2021) Integrative and Comparative BiologyIntegr Comp Biol. 2022 Feb 5;61(6):1991-2010.
Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing. Durdagi S, Dağ C, Dogan B, Yigin M, Avsar T, Buyukdag C, Erol I, Ertem FB, Calis S, Yildirim G, Orhan MD, Guven O, Aksoydan B, Destan E, Sahin K, Besler SO, Oktay L, Shafiei A, Tolu I, Ayan E, Yuksel B, Peksen AB, Gocenler O, Yucel AD, Can O, Ozabrahamyan S, Olkan A, Erdemoglu E, Aksit F, Tanisali G, Yefanov OM, Barty A, Tolstikova A, Ketawala GK, Botha S, Dao H, Hayes B, Liang M, Seaberg MH, Hunter MS, Batyuk A, Mariani V, Su Z, Poitevin F, Yoon CH, Kupitz C, Sierra RG, Snell EH, and DeMirci H. Structure 2021, 76, 74-85.
Introduction: New tools for challenges in membrane biology. Jiang, Q-X. Chapter 1, pages 1-8 in New Techniques for studying biomembranes, CRC Press 2020, Taylor and Francis Group.
Reconstituted Membrane Systems for Assaying Membrane Proteins in Controlled Lipid Environments. Jiang, Q-X, Yadav, G.P. Chapter 6, pages 93-122 in New Techniques for studying biomembranes, CRC Press 2020, Taylor and Francis Group.
XFEL and NMR Structures of Francisella Lipoprotein Reveal Conformational Space of Drug Target Against Tularemia. Zook J, Shekhar M, Hansen D, Conrad C, Grant T, Gupta C, White T, Barty A, Basu S, Zhao Y, Zatsepin N, Ishchenko A, Batyuk A, Gati C, Li C, Galli L, Coe J, Hunter M, Liang M, Weierstall U, Nelson G, James D, Stauch B, Craciunescu F, Thifault D, Liu W, Cherezov V, Singharoy A, Fromme P. Structure. 2020 May 5;28(5):540-547.e3. doi: 10.1016/j.str.2020.02.005. Epub 2020 Mar 5.
Structural basis of ligand recognition at the human MT1 melatonin receptor. Stauch B, Johansson LC, McCorvy JD, Patel N, Han GW, Huang XP, Gati C, Batyuk A, Slocum ST, Ishchenko A, Brehm W, White TA, Michaelian N, Madsen C, Zhu L, Grant TD, Grandner JM, Shiriaeva A, Olsen RHJ, Tribo AR, Yous S, Stevens RC, Weierstall U, Katritch V, Roth BL, Liu W, Cherezov V. Nature. 2019 May;569(7755):284-288. doi: 10.1038/s41586-019-1141-3. Epub 2019 Apr 24.
Protein and RNA dynamical fingerprinting. Niessen KA, Xu M, George DK, Chen MC, Ferré-D’Amaré AR, Snell EH, Cody V, Pace J, Schmidt M, Markelz AG. Nat Commun. 2019 Mar 4;10(1):1026. doi: 10.1038/s41467-019-08926-3.
Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase. Ishigami I, Lewis-Ballester A, Echelmeier A, Brehm G, Zatsepin NA, Grant TD, Coe JD, Lisova S, Nelson G, Zhang S, Dobson ZF, Boutet S, Sierra RG, Batyuk A, Fromme P, Fromme R, Spence JCH, Ros A, Yeh SR, Rousseau DL.Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3572-3577. doi: 10.1073/pnas.1814526116. Epub 2019 Feb 11
X-ray Emission Spectroscopy at X-ray Free Electron Lasers: Limits to Observation of the Classical Spectroscopic Response for Electronic Structure Analysis. Jensen SC, Sullivan B, Hartzler DA, Aguilar JM, Awel S, Bajt S, Basu S, Bean R, Chapman HN, Conrad C, Frank M, Fromme R, Martin-Garcia JM, Grant TD, Heymann M, Hunter MS, Ketawala G, Kirian RA, Knoska J, Kupitz C, Li X, Liang M, Lisova S, Mariani V, Mazalova V, Messerschmidt M, Moran M, Nelson G, Oberthür D, Schaffer A, Sierra RG, Vaughn N, Weierstall U, Wiedorn MO, Xavier PL, Yang JH, Yefanov O, Zatsepin NA, Aquila A, Fromme P, Boutet S, Seidler GT, Pushkar Y.J Phys Chem Lett. 2019 Feb 7;10(3):441-446. doi: 10.1021/acs.jpclett.8b03595. Epub 2019 Jan 16.
Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography. Olmos JL Jr, Pandey S, Martin-Garcia JM, Calvey G, Katz A, Knoska J, Kupitz C, Hunter MS, Liang M, Oberthuer D, Yefanov O, Wiedorn M, Heyman M, Holl M, Pande K, Barty A, Miller MD, Stern S, Roy-Chowdhury S, Coe J, Nagaratnam N, Zook J, Verburgt J, Norwood T, Poudyal I, Xu D, Koglin J, Seaberg MH, Zhao Y, Bajt S, Grant T, Mariani V, Nelson G, Subramanian G, Bae E, Fromme R, Fung R, Schwander P, Frank M, White TA, Weierstall U, Zatsepin N, Spence J, Fromme P, Chapman HN, Pollack L, Tremblay L, Ourmazd A, Phillips GN Jr, Schmidt M. BMC Biol. 2018 May 31;16(1):59. doi: 10.1186/s12915-018-0524-5.
Structure of the full-length glucagon class B G-protein-coupled receptor. Zhang H, Qiao A, Yang D, Yang L, Dai A, de Graaf C, Reedtz-Runge S, Dharmarajan V, Zhang H, Han GW, Grant TD, Sierra RG, Weierstall U, Nelson G, Liu W, Wu Y, Ma L, Cai X, Lin G, Wu X, Geng Z, Dong Y, Song G, Griffin PR, Lau J, Cherezov V, Yang H, Hanson MA, Stevens RC, Zhao Q, Jiang H, Wang MW, Wu B. Nature. 2017 Jun 8;546(7657):259-264. doi: 10.1038/nature22363. Epub 2017 May 17.
Double-flow focused liquid injector for efficient serial femtosecond crystallography. Oberthuer D, Knoška J, Wiedorn MO, Beyerlein KR, Bushnell DA, Kovaleva EG, Heymann M, Gumprecht L, Kirian RA, Barty A, Mariani V, Tolstikova A, Adriano L, Awel S, Barthelmess M, Dörner K, Xavier PL, Yefanov O, James DR, Nelson G, Wang D, Calvey G, Chen Y, Schmidt A, Szczepek M, Frielingsdorf S, Lenz O, Snell E, Robinson PJ, Šarler B, Belšak G, Maček M, Wilde F, Aquila A, Boutet S, Liang M, Hunter MS, Scheerer P, Lipscomb JD, Weierstall U, Kornberg RD, Spence JC, Pollack L, Chapman HN, Bajt S. Sci Rep. 2017 Mar 16;7:44628. doi: 10.1038/srep44628.
Douglas (Doug) Dorset (1942-2016). Baugh L, Disko M, Lamberti W, Strohmaier K, Duax W, Fryer J, Hovmöller S, Zou X, Marks L, Nicolopoulos S. Acta Crystallogr A Found Adv. 2017 Mar 1;73(Pt 2):157-158. doi: 10.1107/S2053273316020210.
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Stagno JR, Liu Y, Bhandari YR, Conrad CE, Panja S, Swain M, Fan L, Nelson G, Li C, Wendel DR, White TA, Coe JD, Wiedorn MO, Knoska J, Oberthuer D, Tuckey RA, Yu P, Dyba M, Tarasov SG, Weierstall U, Grant TD, Schwieters CD, Zhang J, Ferré-D’Amaré AR, Fromme P, Draper DE, Liang M, Hunter MS, Boutet S, Tan K, Zuo X, Ji X, Barty A, Zatsepin NA, Chapman HN, Spence JC, Woodson SA, Wang YX. Nature. 2017;541:242-246.
2016
Structural enzymology using X-ray free electron lasers. Kupitz C, Olmos JL Jr, Holl M, Tremblay L, Pande K, Pandey S, Oberthür D, Hunter M, Liang M, Aquila A, Tenboer J, Calvey G, Katz A, Chen Y, Wiedorn MO, Knoska J, Meents A, Majriani V, Norwood T, Poudyal I, Grant T, Miller MD, Xu W, Tolstikova A, Morgan A, Metz M, Martin-Garcia JM, Zook JD, Roy-Chowdhury S, Coe J, Nagaratnam N, Meza D, Fromme R, Basu S, Frank M, White T, Barty A, Bajt S, Yefanov O, Chapman HN, Zatsepin N, Nelson G, Weierstall U, Spence J, Schwander P, Pollack L, Fromme P, Ourmazd A, Phillips GN Jr, Schmidt M. Struct Dyn. 2016 Dec 15;4(4):044003. doi: 10.1063/1.4972069.