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AMBER

AMBER (Assisted Model Building and Energy Refinement) is a suite of programs designed to carry out molecular dynamics simulations, particularly on biomolecules.

Category:  Biochemistry

Usage Notes:

Show the software versions:  module avail amber

Loading the module will set the path and any necessary variables:  module load amber/version

The environment $AMBERHOME will be defined:

  • $AMBERHOME/examples (sample input files)
  • $AMBERHOME/doc (documentation, including full manual)