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Bioinformatics

Bioinformatics software packages installed on the cluster.

6/19/14
BLAST (Basic Local Alignment Search Tool) finds regions of local similarity between sequences.
6/19/14
Parallel implementation of NCBI BLAST.
6/19/14
CS-Rosetta is a suite for chemical shifts based protein structure prediction using ROSETTA.
6/19/14
EIGENSOFT is a software suite for population genetics methods and the EIGENSTRAT stratification method.
6/19/14
HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
6/19/14
IGV (Integrative Genomics Viewer) is visualization tool for the exploration of large genomic datasets.
6/19/14
A database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes
6/19/14
MPI-HMMER is a parallel version of HMMER.
6/19/14
MrBayes is a parallel program for the Bayesian estimation of phylogeny.
6/19/14
Rosetta Commons is a protein sequence analysis suite.